dynsight.analysisΒΆ

analysis package.

Functions

compute_entropy_gain

Compute the relative information gained by the clustering.

compute_entropy_gain_multi

Compute the relative information gained by the clustering.

compute_kl_entropy

Estimate Shannon differential entropy using Kozachenko-Leonenko.

compute_kl_entropy_multi

Estimate Shannon differential entropy using Kozachenko-Leonenko.

compute_negentropy

Estimate negentropy of a dataset.

compute_rdf

Radial Distribution Function between two types of particles.

compute_shannon

Compute the Shannon entropy of a univariate data distribution.

compute_shannon_multi

Compute the Shannon entropy of a multivariate data distribution.

cross_time_correlation

Computes the mean cross time correlation function for time-series.

info_gain

Compute the information gained by the clustering.

sample_entropy

Computes the Sample Entropy of a single time-series.

self_time_correlation

Computes the mean self time correlation function for time-series.

shannon

Compute the Shannon entropy of a data distribution.

spatialaverage

Compute spatially averaged descriptor values over neighboring particles.

two_nn_estimator

Computes the intrinsic dimension with Two-NN estimator.